DNA profile indicator marks

Overview of GMI media, publications & coverage

Tuesday 22 Apr 14
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Contact

Vibeke Dybdahl Hammer
Administrative Co-ordinator
National Food Institute
+45 35 88 64 20

We have created a list of publications and coverage on GMI. The list contains internet and social media, websites and printed publications and is by no means complete. If you have any suggestions to add to the list, please feel free to contact us.

Internet & social media

Wikipedia: http://en.wikipedia.org/wiki/Global_microbial_identifier

Cyclopedia: http://en.cyclopaedia.net/wiki/Global-microbial-identifier

Twitter: @GMI_post

Youtube: https://www.youtube.com/watch?v=xcK76ARNNdw

Knovio: http://go.knovio.com/watch/ea4677ef09914924a51191777c5f6659

Scoop It:http://www.scoop.it/t/next-generation-sequencing-for-global-health/p/3996376960/2013/02/10/global-microbial-identifier#

Print media

Flyer: Global Microbial Identifier: A Revolution Against Infectious Diseases (pdf)

Folder (DTU 2012): Integrated global detection and characterization of infectious diseases 

Brisse S, Brehony C, Conceição T, Cubero M, Glasner C, Le Gouil M, Renvoisé A, Sheppard S, Weinert L. Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: An update from the IMMEM-10 conference. Res Microbiol. 2014 Jan 31. pii: S0923-2508(14)00013-8. doi:10.1016/j.resmic.2014.01.003. [Epub ahead of print] PubMed PMID: 24486597. http://www.ncbi.nlm.nih.gov/pubmed/24486597

Hasman H, Saputra D, Sicheritz-Ponten T, Lund O, Svendsen CA, Frimodt-Møller N, Aarestrup FM. Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples. J Clin Microbiol. 2014 Jan;52(1):139-46. doi: 10.1128/JCM.02452-13. Epub 2013 Oct 30. PubMed PMID: 24172157; PubMed Central PMCID: PMC3911411.

http://jcm.asm.org/content/52/1/139.long

Maiden MC, van Rensburg MJ, Bray JE, Earle SG, Ford SA, Jolley KA, McCarthy

ND. MLST revisited: the gene-by-gene approach to bacterial genomics. Nat Rev

Microbiol. 2013 Oct;11(10):728-36. doi: 10.1038/nrmicro3093. Epub 2013 Sep 2.

PubMed PMID: 23979428.

http://www.nature.com/nrmicro/journal/v11/n10/full/nrmicro3093.html

Carriço JA, Sabat AJ, Friedrich AW, Ramirez M; ESCMID Study Group for

Epidemiological Markers (ESGEM). Bioinformatics in bacterial molecular

epidemiology and public health: databases, tools and the next-generation

sequencing revolution. Euro Surveill. 2013 Jan 24;18(4):20382. Review. PubMed

PMID: 23369390.

http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20382

Aarestrup FM, Brown EW, Detter C, Gerner-Smidt P, Gilmour MW, Harmsen D,

Hendriksen RS, Hewson R, Heymann DL, Johansson K, Ijaz K, Keim PS, Koopmans M,

Kroneman A, Lo Fo Wong D, Lund O, Palm D, Sawanpanyalert P, Sobel J, Schlundt J.

Integrating genome-based informatics to modernize global disease monitoring,

information sharing, and response. Emerg Infect Dis. 2012 Nov;18(11):e1. doi:

10.3201/eid/1811.120453. PubMed PMID: 23092707; PubMed Central PMCID: PMC3559169.

http://wwwnc.cdc.gov/eid/article/18/11/12-0453_article.htm

Jørgen Schlundt. The time is right for a global genomic database for microorganisms. Health Diplomacy Monitor, 2012, Volume 3, issue 2.

Link: http://www.ghd-net.org/sites/default/files/Health%20Diplomacy%20Monitor%20Volume%203%20Issue%202.pdf

Köser CU, Ellington MJ, Cartwright EJ, Gillespie SH, Brown NM, Farrington M,

Holden MT, Dougan G, Bentley SD, Parkhill J, Peacock SJ. Routine use of microbial

whole genome sequencing in diagnostic and public health microbiology. PLoS

Pathog. 2012;8(8):e1002824. doi: 10.1371/journal.ppat.1002824. Epub 2012 Aug 2.

Review. PubMed PMID: 22876174; PubMed Central PMCID: PMC3410874.

http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1002824

Kupferschmidt K. Epidemiology. Outbreak detectives embrace the genome era. Science. 2011 Sep 30;333(6051):1818-9. doi: 10.1126/science.333.6051.1818. PMID: 21960605.

http://www.sciencemag.org/content/333/6051/1818.full

Coverage

Jennifer Adams Launching Whole Genome Sequencing in the Public Health Realm.

LabMatters, 2013, issue 4:

http://www.bluetoad.com/publication/frame.php?i=184582&p=8&pn=&ver=flex

Copenhagen Life Science, ‘Global Disease Network’:

http://issuu.com/raskmedia/docs/cls_1-2013_net/9

GMI on the web

Centre for Disease Control and Prevention:

http://www.cdc.gov/pulsenet/next-generation.html

The Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "Giuseppe Caporale" (IZSAM):

http://www.izs.it/IZS/Engine/RAServePG.php/P/548810010300/L/1

Independent news on research in the Nordic countries:

http://sciencenordic.com/scientists-planning-global-network-diseases

Food and Drug Administration (FDA):

http://www.fda.gov/Food/FoodScienceResearch/WholeGenomeSequencingProgramWGS/ucm363139.htm

IRCCS Foundation Policlinico San Matteo:

http://epidemiologiagenomica.sanmatteo.org/site/home/network-global-microbial-identifier.html

Food and Standard Agency (FSA):

http://www.food.gov.uk/science/research/foodborneillness/foodbornediseaseresearch/b14programme/b14projlist/fs102062/#.UwXBxGJdXHU

The European Bioinformatics Institute:

http://www.ebi.ac.uk/ena/about/pathogen-surveillance-data-submission-instructions

Technical University of Denmark:

http://www.food.dtu.dk/english/News/2012/12/Invitation_5th_Meeting_on_Global_Microbial_Identifier

EU REFERENCE LABORATORY – ANTIMICROBIAL RESISTANCE (PowerPoint):

http://www.eurl-ar.eu/data/images/ws_april-2012/t9-genomic_identification.pdf

PATRIC, Bacterial Bioinformatics Resource Center: 

http://enews.patricbrc.org/2814/dr-bruno-sobral-attends-5th-meeting-on-global-microbial-identifier/

Austrian Agency for Health and Food Safety (AGES):

http://www.ages.at/uploads/media/10_DANMAP_consequences_for_sustainable_livestock_production_Jorgen_Schlundt_National_Food_Institute_D%C3%A4nemark.pdf

Kilimanjaro Clinical Research Institute (KCRI):

http://www.kcri.ac.tz/research/research-programmes/global-microbial-identifiertechnical-university-denmark

The Wadsworth Center Master of Science in Laboratory Sciences:

http://laboratorysciences.wadsworth.org/node/189

World Organisation for Animal Health (OIE):

http://www.oie.int/fileadmin/Home/eng/Internationa_Standard_Setting/docs/pdf/BSC/A_BSC_Sept2013.pdf

MDR-TB:

http://www.mdr-tb.org/resources/Crook+Workshop+sequencing.pdf

https://www.globalmicrobialidentifier.org/news-and-events/nyheder/Nyhed?id=%7B2693FF82-5EC1-433D-BFD3-2E855A6F5C3D%7D
21 JULY 2019