We have created a list of publications and coverage on GMI. The list contains internet and social media, websites and printed publications and is by no means complete. If you have any suggestions to add to the list, please feel free to contact us.
Internet & social media
Wikipedia: http://en.wikipedia.org/wiki/Global_microbial_identifier
Cyclopedia: http://en.cyclopaedia.net/wiki/Global-microbial-identifier
Twitter: @GMI_post
Youtube: https://www.youtube.com/watch?v=xcK76ARNNdw
Knovio: http://go.knovio.com/watch/ea4677ef09914924a51191777c5f6659
Scoop It:http://www.scoop.it/t/next-generation-sequencing-for-global-health/p/3996376960/2013/02/10/global-microbial-identifier#
Print media
Flyer: Global Microbial Identifier: A Revolution Against Infectious Diseases (pdf)
Folder (DTU 2012): Integrated global detection and characterization of infectious diseases
Brisse S, Brehony C, Conceição T, Cubero M, Glasner C, Le Gouil M, Renvoisé A, Sheppard S, Weinert L. Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: An update from the IMMEM-10 conference. Res Microbiol. 2014 Jan 31. pii: S0923-2508(14)00013-8. doi:10.1016/j.resmic.2014.01.003. [Epub ahead of print] PubMed PMID: 24486597. http://www.ncbi.nlm.nih.gov/pubmed/24486597
Hasman H, Saputra D, Sicheritz-Ponten T, Lund O, Svendsen CA, Frimodt-Møller N, Aarestrup FM. Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples. J Clin Microbiol. 2014 Jan;52(1):139-46. doi: 10.1128/JCM.02452-13. Epub 2013 Oct 30. PubMed PMID: 24172157; PubMed Central PMCID: PMC3911411.
http://jcm.asm.org/content/52/1/139.long
Maiden MC, van Rensburg MJ, Bray JE, Earle SG, Ford SA, Jolley KA, McCarthy
ND. MLST revisited: the gene-by-gene approach to bacterial genomics. Nat Rev
Microbiol. 2013 Oct;11(10):728-36. doi: 10.1038/nrmicro3093. Epub 2013 Sep 2.
PubMed PMID: 23979428.
http://www.nature.com/nrmicro/journal/v11/n10/full/nrmicro3093.html
Carriço JA, Sabat AJ, Friedrich AW, Ramirez M; ESCMID Study Group for
Epidemiological Markers (ESGEM). Bioinformatics in bacterial molecular
epidemiology and public health: databases, tools and the next-generation
sequencing revolution. Euro Surveill. 2013 Jan 24;18(4):20382. Review. PubMed
PMID: 23369390.
http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20382
Aarestrup FM, Brown EW, Detter C, Gerner-Smidt P, Gilmour MW, Harmsen D,
Hendriksen RS, Hewson R, Heymann DL, Johansson K, Ijaz K, Keim PS, Koopmans M,
Kroneman A, Lo Fo Wong D, Lund O, Palm D, Sawanpanyalert P, Sobel J, Schlundt J.
Integrating genome-based informatics to modernize global disease monitoring,
information sharing, and response. Emerg Infect Dis. 2012 Nov;18(11):e1. doi:
10.3201/eid/1811.120453. PubMed PMID: 23092707; PubMed Central PMCID: PMC3559169.
http://wwwnc.cdc.gov/eid/article/18/11/12-0453_article.htm
Jørgen Schlundt. The time is right for a global genomic database for microorganisms. Health Diplomacy Monitor, 2012, Volume 3, issue 2.
Link: http://www.ghd-net.org/sites/default/files/Health%20Diplomacy%20Monitor%20Volume%203%20Issue%202.pdf
Köser CU, Ellington MJ, Cartwright EJ, Gillespie SH, Brown NM, Farrington M,
Holden MT, Dougan G, Bentley SD, Parkhill J, Peacock SJ. Routine use of microbial
whole genome sequencing in diagnostic and public health microbiology. PLoS
Pathog. 2012;8(8):e1002824. doi: 10.1371/journal.ppat.1002824. Epub 2012 Aug 2.
Review. PubMed PMID: 22876174; PubMed Central PMCID: PMC3410874.
http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1002824
Kupferschmidt K. Epidemiology. Outbreak detectives embrace the genome era. Science. 2011 Sep 30;333(6051):1818-9. doi: 10.1126/science.333.6051.1818. PMID: 21960605.
http://www.sciencemag.org/content/333/6051/1818.full
Coverage
Jennifer Adams Launching Whole Genome Sequencing in the Public Health Realm.
LabMatters, 2013, issue 4:
http://www.bluetoad.com/publication/frame.php?i=184582&p=8&pn=&ver=flex
Copenhagen Life Science, ‘Global Disease Network’:
http://issuu.com/raskmedia/docs/cls_1-2013_net/9
GMI on the web
Centre for Disease Control and Prevention:
http://www.cdc.gov/pulsenet/next-generation.html
The Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "Giuseppe Caporale" (IZSAM):
http://www.izs.it/IZS/Engine/RAServePG.php/P/548810010300/L/1
Independent news on research in the Nordic countries:
http://sciencenordic.com/scientists-planning-global-network-diseases
Food and Drug Administration (FDA):
http://www.fda.gov/Food/FoodScienceResearch/WholeGenomeSequencingProgramWGS/ucm363139.htm
IRCCS Foundation Policlinico San Matteo:
http://epidemiologiagenomica.sanmatteo.org/site/home/network-global-microbial-identifier.html
Food and Standard Agency (FSA):
http://www.food.gov.uk/science/research/foodborneillness/foodbornediseaseresearch/b14programme/b14projlist/fs102062/#.UwXBxGJdXHU
The European Bioinformatics Institute:
http://www.ebi.ac.uk/ena/about/pathogen-surveillance-data-submission-instructions
Technical University of Denmark:
http://www.food.dtu.dk/english/News/2012/12/Invitation_5th_Meeting_on_Global_Microbial_Identifier
EU REFERENCE LABORATORY – ANTIMICROBIAL RESISTANCE (PowerPoint):
http://www.eurl-ar.eu/data/images/ws_april-2012/t9-genomic_identification.pdf
PATRIC, Bacterial Bioinformatics Resource Center:
http://enews.patricbrc.org/2814/dr-bruno-sobral-attends-5th-meeting-on-global-microbial-identifier/
Austrian Agency for Health and Food Safety (AGES):
http://www.ages.at/uploads/media/10_DANMAP_consequences_for_sustainable_livestock_production_Jorgen_Schlundt_National_Food_Institute_D%C3%A4nemark.pdf
Kilimanjaro Clinical Research Institute (KCRI):
http://www.kcri.ac.tz/research/research-programmes/global-microbial-identifiertechnical-university-denmark
The Wadsworth Center Master of Science in Laboratory Sciences:
http://laboratorysciences.wadsworth.org/node/189
World Organisation for Animal Health (OIE):
http://www.oie.int/fileadmin/Home/eng/Internationa_Standard_Setting/docs/pdf/BSC/A_BSC_Sept2013.pdf
MDR-TB:
http://www.mdr-tb.org/resources/Crook+Workshop+sequencing.pdf